Creates an integrated HTML report combining differential expression results, enrichment analyses (GO, KEGG, GSEA), and gene regulatory network (GRN) data. Uses a parameterized R Markdown template for rendering.
generate_report(
de_results,
enrichment_results,
grn_object,
output_file = "analysis_report.html",
template_path = NULL,
params_list = list(),
quiet = TRUE
)Character string with the path to the rendered report.
Data frame or list with differential expression results.
List of enrichment results (e.g., BP, MF, KEGG, GSEA).
An igraph object of the gene regulatory network.
Output report name (default: "analysis_report.html").
Path to the R Markdown template. If NULL, uses the built-in template.
Named list of extra parameters passed to the R Markdown report.
Logical; if TRUE (default), rendering is quiet.