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YplantQMC (version 0.6-3)

Plant Architectural Analysis with Yplant and QuasiMC

Description

An R implementation of Yplant, combined with the QuasiMC raytracer. Calculate radiation absorption, transmission and scattering, photosynthesis and transpiration of virtual 3D plants.

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Version

Install

install.packages('YplantQMC')

Monthly Downloads

4

Version

0.6-3

License

GPL-2

Maintainer

Remko Duursma

Last Published

December 1st, 2014

Functions in YplantQMC (0.6-3)

ypreport

Make a PDF report of several YplantQMC objects
lightresponse

Non-rectangular hyperbola
getR

Get crown radius of a plant
summary.plant3d

Summarize 3D plants
readp

Reads the data from a .p file.
turtle

A turtle sky with 58 points
readl

Read a Yplant leaf file
setMet

Generate a weather object
Farquhar

Farquhar-Ball-Berry coupled leaf gas exchange model
plot.projectedplant3d

Project plant coordinates onto a viewing plane
setLocation

Generate a location object
makeStand

Make a stand of virtual plants
randomplant

Generate a plant with randomly distributed leaves
psrdata

Get PSR data.
constructplant

Construct a 3D plant
turtle482

A turtle sky with 482 points
plot.leaffile

Plots a Yplant leaf file (a file with extension .l or .lf) in 2D.
plot.plant3d

Plots a plant in 3D
replaceangles

Modify Yplant input files.
runYplant

A single simulation of YplantQMC
includePhy

Make a leaf physiology object
evalHemi

Generate a hemiphoto object
STARbar

Calculate displayed and projected leaf areas of a 3D plant
leafdispersion

Leaf dispersion of 3D plants
YplantDay

Run a simulation over a day with YplantQMC
examplehemi

Two example hemiphotos in YplantQMC format
viewplot

Make a three panel plot of a 3D plant
yplantaltaz

Altitude and azimuth angles
plantexamples

Three example 3D plants
Silhouette

Calculates the area of the 2D convex hull of a projected plant
xmastime

Is it xmas yet?
getangles

Read angles from a .p file.
installQuasiMC

Download and install the QuasiMC executable
crownhull

Calculates and plots the convex hull around the plant crown
turtle244

A turtle sky with 244 points
zenaz

Calculates position of the sun