`findOutliers.func(thres, factor = 4, statesres)`

thres

Estimate of experimental variability, generally, madGenome

factor

Factor indicating how many standard

statesres

The states output of the

`hmm.run.func`

- outlier
- Binary matrix with a row for each clone and column for each sample. "1" indicates outlier, 0 otherwise.
- pred.obs.out
- Matrix with a row for each clone and column for each sample. The entries are the median value for the state with outliers exceluded for all clones but outliers. The value if the observed value for the outliers.
- pred.out
- Matrix with a row for each clone and column for each sample. The entries are the median value for the state

`aCGH`