mergeFunc

mergeHmmStates


    Object of class <code><a rd-options="" href="/link/aCGH?package=aCGH&version=1.50.0" data-mini-rdoc="aCGH::aCGH">aCGH</a></code>.
  

aCGH.obj

the sublist of the states.hmm list output from
    <code><a rd-options="" href="/link/find.hmm.states?package=aCGH&version=1.50.0" data-mini-rdoc="aCGH::find.hmm.states">find.hmm.states</a></code> for a given model selection crterion
  

statesres

The states whose predicted values are less than minDiff
    apart are merged into one state and all the predicited values are
    recomputed.
  

minDiff


    Model selection criterion to use, See <code><a rd-options="" href="/link/find.hmm.states?package=aCGH&version=1.50.0" data-mini-rdoc="aCGH::find.hmm.states">find.hmm.states</a></code>.
  

model.use


  <code>mergeFunc</code> takes the output of hmm.run.func (or find.hmm.states)
  with a particular model selection criterion and iteratively merges the
  states with means closer than a supplied threshold.
  <code>mergeHmmStates</code> is a frontend for <code>mergeFunc</code> using
  <code><a rd-options="" href="/link/aCGH?package=aCGH&version=1.50.0" data-mini-rdoc="aCGH::aCGH">aCGH</a></code> object.


models

Functions for reading aCGH data from image analysis output
files and clone information files, creation of aCGH S3 objects
for storing these data. Basic methods for accessing/replacing,
subsetting, printing and plotting aCGH objects.

Peter Dimitrov

aCGH

Classes and functions for Array Comparative Genomic
Hybridization data.

mergeFunc function


    Object of class <code><a rd-options='' href='aCGH'>aCGH</a></code>.
  

the sublist of the states.hmm list output from
    <code><a rd-options='' href='find.hmm.states'>find.hmm.states</a></code> for a given model selection crterion
  


    Model selection criterion to use, See <code><a rd-options='' href='find.hmm.states'>find.hmm.states</a></code>.
  


  <code>mergeFunc</code> takes the output of hmm.run.func (or find.hmm.states)
  with a particular model selection criterion and iteratively merges the
  states with means closer than a supplied threshold.
  <code>mergeHmmStates</code> is a frontend for <code>mergeFunc</code> using
  <code><a rd-options='' href='aCGH'>aCGH</a></code> object.


mergeFunc: Funtion to merge states based on their state means

Description

Usage

Arguments

Value

Details

References

See Also