Cruciani

A data frame of 3 Cruciani properties for 20 amino acids.

datasets

Given a protein multiple sequence alignment, it is daunting task to assess the effects of substitutions along sequence length. 'aaSEA' package is intended to help researchers to rapidly analyse property changes caused by single, multiple and correlated amino acid substitutions in proteins. Methods for identification of co-evolving positions from multiple sequence alignment are as described in : Pel<c3><a9> et al., (2017) <doi:10.4172/2379-1764.1000250>.

Raja Reddy D.M

aaSEA

Amino Acid Substitution Effect Analyser

Cruciani function

A data frame with 20 rows and 3 columns representing amino acids and Cruciani properties:<dl class="dl-horizontal">
 <dt></dt><dd>Names of amino acids</dd>
 <dt>PP1</dt><dd>Polarity</dd>
 <dt>PP2</dt><dd>Hydrophobicity</dd>
 <dt>PP3</dt><dd>H-bonding</dd>
 ...
</dl>

Format

A data frame of 3 Cruciani properties for 20 amino acids. — Cruciani

A data frame with 20 rows and 3 columns representing amino acids and Cruciani properties:<dl class='dl-horizontal'>
 <dt></dt><dd>Names of amino acids</dd>
 <dt>PP1</dt><dd>Polarity</dd>
 <dt>PP2</dt><dd>Hydrophobicity</dd>
 <dt>PP3</dt><dd>H-bonding</dd>
 ...
</dl>

Cruciani: A data frame of 3 Cruciani properties for 20 amino acids.

Description

Usage

Arguments

Format