corSubFile

This file is output of 'getTopSub' function with subset of alignment as input. This subset alignment is output of 'getCorSite' function

datasets

Given a protein multiple sequence alignment, it is daunting task to assess the effects of substitutions along sequence length. 'aaSEA' package is intended to help researchers to rapidly analyse property changes caused by single, multiple and correlated amino acid substitutions in proteins. Methods for identification of co-evolving positions from multiple sequence alignment are as described in : Pel<c3><a9> et al., (2017) <doi:10.4172/2379-1764.1000250>.

Raja Reddy D.M

aaSEA

Amino Acid Substitution Effect Analyser

corSubFile function

A data frame with 2 Columns representing positional pairs:<dl class="dl-horizontal">
 <dt>Pos1</dt><dd>Position one prefixed with Wt amino acid and suffixed with substitution</dd>
 <dt>Pos2</dt><dd>Position two prefixed with Wt amino acid and suffixed with substitution</dd>
 ...
</dl>

Format

A data frame of correlated sites. — corSubFile

A data frame with 2 Columns representing positional pairs:<dl class='dl-horizontal'>
 <dt>Pos1</dt><dd>Position one prefixed with Wt amino acid and suffixed with substitution</dd>
 <dt>Pos2</dt><dd>Position two prefixed with Wt amino acid and suffixed with substitution</dd>
 ...
</dl>

corSubFile: A data frame of correlated sites.

Description

Usage

Arguments

Format