aaSEA (version 1.1.0)

getCorPropChange: Get property changes associated with correlated substitutions

Description

Get property changes associated with correlated substitutions

Usage

getCorPropChange(corSubFile, propertyDF = "Cruciani",
  propertyIndex = 1)

Arguments

corSubFile

A dataframe with two columns i.e. Pos1 and Pos2. This file is generated by getTopSub

propertyDF

Choose one of Cruciani, Fasgai, Kidera or AAindex based amino acid properties

propertyIndex

The amino acid property to analyse. It is row number in propertyDF data frame

Value

A data frame of 12 columns consisting data regarding Wild type and mutant resides and their positions alogn with their properties and net changes between Pos1 and Pos2

Examples

# NOT RUN {
getCorPropChange(corSubFile = corSubFile, propertyDF = "Cruciani", propertyIndex = 1)
# }