aaSEA (version 1.1.0)

getCorSites: Get correlated sites with substitutions

Description

Get correlated sites with substitutions

Usage

getCorSites(fileLoc, corMethod = "mcbasc")

Arguments

fileLoc

exact location of multiple sequence alignment file in "FASTA" format

corMethod

One of the methods to compute correlated sites viz. 'mip', 'elsc', 'mcbasc' and 'omes'. Default is 'mcbasc'.

Value

A subset alignment matrix of original multiple sequence alignment with significant correlations.

Examples

# NOT RUN {
file = system.file("extdata", "linB_toy_ali.fasta", package = "aaSEA")
getCorSites(fileLoc = file,corMethod="mcbasc")
# }