aaSEA (version 1.1.0)

getTopSub: Get sites with more than one-correlated substitutions other than conserved amino acids at that position

Description

Get sites with more than one-correlated substitutions other than conserved amino acids at that position

Usage

getTopSub(selMat)

Arguments

selMat

A subset matrix of original multiple sequence alignment with significant correlations identified with 'getCorSites' function

Value

A data frame with two columns i.e. Pos1 and Pos2 which is a filtered subset of many correlated substitutions based on frequency of substitution after consensus of a column in multiple sequence alignment

Examples

# NOT RUN {
selMatLoc <- system.file("extdata", "selMat.rda", package = "aaSEA")
selMat <- readRDS(selMatLoc)
getTopSub(selMat = selMat)
# }