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aae.pop (version 0.2.0)

Flexible Population Dynamics Simulations

Description

Simulate population dynamics from realistically complex matrix population models in a plug-and-play fashion. Supports aspatial and spatially implicit models with one or more species and time-varying covariates, stochasticity, density dependence, additions or removals of individuals, interspecific interactions, and metapopulations.

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Version

Install

install.packages('aae.pop')

Version

0.2.0

License

Apache License 2.0

Issues

Pull Requests

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Repository

https://github.com/aae-stats/aae.pop

Homepage

https://aae-stats.github.io/aae.pop/

Maintainer

Jian Yen

Last Published

January 31st, 2026

Functions in aae.pop (0.2.0)

Calculate the probability density of a summary statistic across all iterations of a simulate object

replicated_covariates

Specify replicate-specific covariate dependence in models of population dynamics

Simulate single or multispecies population dynamics in R

Functions for a single time-step update

Specify environmental and demographic stochasticity in models of population dynamics

density_functions

Common forms of density dependence

Calculate the cumulative distribution function of a summary statistic across all iterations of a simulate object

Specify additions or removals in models of population dynamics

Specify dispersal between populations in a metapopulation model

density_dependence

Specify density dependence in models of population dynamics

Specify covariate dependence in models of population dynamics

Calculate expected population size for a simulate object based on generic functions (ExPS)

Create and update population dynamics objects

Calculate expected minimum population size (EMPS) for a simulate object

aae.pop: flexible simulation of multispecies population dynamics

Calculate (quasi-)extinction risk for a simulate object

Random number generators not available in existing R packages

Isolate elements of population dynamics models

Create a metapopulation dynamics object

Calculate (quasi-)extinction risk at multiple thresholds for a simulate object

Create a population dynamics object with multiple species

pairwise_interaction

Specify interactions between two species