abcdeFBA (version 0.1)

BFD_Processor: BFD_Processor, a Bi-Flux-Del-Processor function

Description

BFD_Processor reassembles the "result(n)" files created by Exhaustive_double_deletion, the result files should be a complete set from 1-n and put in a folder called BKO in the current working directory before executing this function. The output is a tab delimited spreadsheet Fatal_Double_knockouts_unique.xls

Usage

BFD_Processor(fba_object,EXSDR)

Arguments

fba_object

is a list containing the data required to perform flux balance analysis. The elements of the list are mat which is the stoichiometric matrix, dir which gives the direction of the equality constraints, obj specifies the objective function for the

EXSDR

A list of the type generated by the Exhaustive_single_deletion function, this list may be passed to this function or the function will generate the list on its own. It is used for removing the results of lethal single knockouts which will form

Examples

#Function to process the results of the double knockout
	#data(Ecoli_core)	
	#BFD_Processor(Ecoli_core,EXSDR=Exhaustive_single_deletion_results)	
	# A prompt will appear asking for the number of simulation pieces 
	#and also to make sure you have your results filled in a folder called BKO