FBA_solve: FBA_solve, a function to solve CBM problems
Description
This function sugar-coats Rglpk_solve_LP
which is a function provided by the Rglpk package,
FBA_solve solves FBA problems using Rglpk_solve_LP
and gives the solver output in a CBM context including
solver error messages and graceful degradation.
is a list containing the data required to
perform flux balance analysis. The elements of the list are
mat which is the stoichiometric matrix, dir which gives the
direction of the equality constraints, obj specifies the
objective function for the s
precision
A number indicating the precision of the flux solution
after the decimal point, defaults to 6
verbosity
is a Boolean indicating if the verbose output of the LP solver
should be displayed during simulation, defaults to FALSE
maximize
is a Boolean that can over-ride the default mode of optimization
(maximization) and minimize if FALSE
# Flux Balance Analysis performed on a core-metabolism model of E.coli data(Ecoli_core)
FBA_solve(fba_object=Ecoli_core,precision=6,verbosity=FALSE,maximize=TRUE)