abcdeFBA (version 0.2)

BYPASS_REACTIONS_SUBSTRATE: BYPASS_REACTIONS_SUBSTRATE, to find the influx and efflux reactions available to a particular metabolite/substrate

Description

this function computes the production and consumption fluxes available to a particular metabolite from the fba_object and returns a list of with elements Production and Consumption

Usage

BYPASS_REACTIONS_SUBSTRATE(substrate_number,fba_object)

Arguments

fba_object

Is a list containing the data required to perform flux balance analysis. The elements of the list are mat which is the stoichiometric matrix, dir which gives the direction of the equality constraints, obj specifies the objective function for the simu

substrate_number

this is the metabolite number of interest which may be found by using the SEARCH_metabolite function

Examples

#To find the Bypass Reactions for a Substrate
	data(Ecoli_core)	
	ATP_prod_consump<-BYPASS_REACTIONS_SUBSTRATE(17,Ecoli_core)