abcdeFBA (version 0.4)

Flux_Ranger: Flux_Ranger - a function to create a flux ramp.

Description

a function to create a linear ramp for the specified flux automatically/intelligently.

Usage

Flux_Ranger(reaction_number,fba_object,divs,art_limit_range)

Arguments

reaction_number

reaction of which the ramp is to be created

fba_object

list containing the necessary elements making up the flux balance model.

divs

the number of divisions for the ramp

art_limit_range

in case the "intelligent ramp" misbehaves you can force the ramp into a particular numeric range by concatenating the lower and upper numeric limits into this variable.

Examples

#Creating a ramp for any reaction
data(Ecoli_core)
flux_range<-Flux_Ranger(reaction_number=12,fba_object=Ecoli_core,divs=10)