identify_duplicates

Identify duplicates in genotypes (i.e. parents or progenies)

Exclusion-based parentage assignment is essential for studies in biodiversity conservation and breeding programs - Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li, (2018), <doi:10.1534/genetics.118.301592>. The tool compares multilocus genotype data of potential parents and offspring, identifying likely parentage relationships while accounting for genotyping errors, missing data, and duplicate genotypes. 'acoRn' includes two algorithms: one generates synthetic genotype data based on user-defined parameters, while the other analyzes existing genotype data to identify parentage patterns. The package is versatile, applicable to diverse organisms, and offers clear visual outputs, making it a valuable resource for researchers.

Nikos Pechlivanis

acoRn

Exclusion-Based Parentage Assignment Using Multilocus Genotype
Data

Fotis Psomopoulos

Aristotelis Papageorgiou

identify_duplicates function

<dl><dt>genotypes</dt>
<dd>a data.frame with the genotypes</dd>
<dt>abbr</dt>
<dd>a string with abbreviation to use</dd></dl>

Arguments

Identify duplicates in genotypes (i.e. parents or progenies) — identify_duplicates

<dl>

<dt>genotypes</dt>
<dd>a data.frame with the genotypes</dd>


<dt>abbr</dt>
<dd>a string with abbreviation to use</dd>

</dl>

identify_duplicates: Identify duplicates in genotypes (i.e. parents or progenies)

Description

Usage

Value

Arguments