assembleMatrices

internal

Designed for studies where animals tagged with acoustic tags are expected
to move through receiver arrays. This package combines the advantages of automatic sorting and checking
of animal movements with the possibility for user intervention on tags that deviate from expected
behaviour. The three analysis functions (explore(), migration() and residency())
allow the users to analyse their data in a systematic way, making it easy to compare results from
different studies.
CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.

Hugo Fl<c3><a1>vio

actel

Acoustic Telemetry Data Analysis

Hugo Flávio

assembleMatrices function

<dl><dt>spatial</dt>
<dd>The spatial data frame.</dd>
<dt>status.df</dt>
<dd>The main results table.</dd>
<dt>arrays</dt>
<dd>A list containing information for each array.</dd>
<dt>paths</dt>
<dd>A list containing the shortest paths between arrays with distance &gt; 1.</dd>
<dt>dotmat</dt>
<dd>The matrix of distances between arrays.</dd></dl>

Arguments

Assemble detection matrices — assembleMatrices

<dl>

<dt>spatial</dt>
<dd>The spatial data frame.</dd>


<dt>status.df</dt>
<dd>The main results table.</dd>


<dt>arrays</dt>
<dd>A list containing information for each array.</dd>


<dt>paths</dt>
<dd>A list containing the shortest paths between arrays with distance &gt; 1.</dd>


<dt>dotmat</dt>
<dd>The matrix of distances between arrays.</dd>

</dl>

assembleMatrices: Assemble detection matrices

Description

Usage

Value

Arguments