move_args

internal

Designed for studies where animals tagged with acoustic tags are expected
to move through receiver arrays. This package combines the advantages of automatic sorting and checking
of animal movements with the possibility for user intervention on tags that deviate from expected
behaviour. The three analysis functions (explore(), migration() and residency())
allow the users to analyse their data in a systematic way, making it easy to compare results from
different studies.
CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.

Hugo Fl<c3><a1>vio

actel

Acoustic Telemetry Data Analysis

Hugo Flávio

move_args function

<dl><dt>arrmoves</dt>
<dd>the array movements list</dd>
<dt>secmoves</dt>
<dd>the section movements list</dd>
<dt>bio</dt>
<dd>The biometrics table.</dd>
<dt>detections.list</dt>
<dd>A list of the detections split by each target tag.</dd>
<dt>dist.mat</dt>
<dd>A matrix of the distances between the deployed ALS.</dd>
<dt>spatial</dt>
<dd>The spatial list.</dd>
<dt>arrays</dt>
<dd>A list containing information for each array.</dd>
<dt>movements</dt>
<dd>the movement dataframe for the tag being analysed.</dd>
<dt>tag</dt>
<dd>The tag ID of the animal currently being analysed</dd>
<dt>type</dt>
<dd>The type of movements being analysed. One of "array" or "section".</dd>
<dt>valid.dist</dt>
<dd>Logical: Is a valid distances matrix being used?</dd></dl>

Arguments

movements.R arguments — move_args

<dl>

<dt>arrmoves</dt>
<dd>the array movements list</dd>


<dt>secmoves</dt>
<dd>the section movements list</dd>


<dt>bio</dt>
<dd>The biometrics table.</dd>


<dt>detections.list</dt>
<dd>A list of the detections split by each target tag.</dd>


<dt>dist.mat</dt>
<dd>A matrix of the distances between the deployed ALS.</dd>


<dt>spatial</dt>
<dd>The spatial list.</dd>


<dt>arrays</dt>
<dd>A list containing information for each array.</dd>


<dt>movements</dt>
<dd>the movement dataframe for the tag being analysed.</dd>


<dt>tag</dt>
<dd>The tag ID of the animal currently being analysed</dd>


<dt>type</dt>
<dd>The type of movements being analysed. One of "array" or "section".</dd>


<dt>valid.dist</dt>
<dd>Logical: Is a valid distances matrix being used?</dd>

</dl>

move_args: movements.R arguments

Description

Arguments