adSplit v1.38.0
Annotation-Driven Clustering
This package implements clustering of microarray gene
expression profiles according to functional annotations. For
each term genes are annotated to, splits into two subclasses
are computed and a significance of the supporting gene set is
determined.
Functions in adSplit
Name | Description | |
golubKEGGSplits | Examplar splitSet | |
hist.splitSet | Overview Histogram for splitSets | |
adSplit | Annotation-Driven Splits | |
adSplit-internal | adSplit Internal Function | |
diana2means | 2-Means with Hierarchical Initialization | |
drawRandomPS | Draw sets of probe-sets | |
print.split | Print Information on Single Splits | |
print.splitSet | Print Summaries for splitSets | |
randomDiana2means | Generate null-distributions of DLD-scores | |
makeEID2PROBESenv | Generate EID2PROBES environment | |
image.splitSet | Illustrate Split Sets | |
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Date | 2010-04-21 |
LazyLoad | yes |
URL | http://compdiag.molgen.mpg.de/software/index.shtml |
License | GPL (>= 2) |
biocViews | Microarray, Clustering |
imports | AnnotationDbi , Biobase (>= 1.5.12) , cluster (>= 1.9.1) , GO.db (>= 1.8.1) , graphics , grDevices , KEGG.db (>= 1.8.1) , multtest (>= 1.6.0) , stats (>= 2.1.0) |
suggests | golubEsets (>= 1.0) , hu6800.db (>= 1.8.1) , vsn (>= 1.5.0) |
depends | methods (>= 2.1.0) , R (>= 2.1.0) |
Contributors | Joern Toedling, Claudio Lottaz |
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