adSplit v1.38.0

by Claudio Lottaz

Annotation-Driven Clustering

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Functions in adSplit

Name	Description
golubKEGGSplits	Examplar splitSet
hist.splitSet	Overview Histogram for splitSets
adSplit	Annotation-Driven Splits
adSplit-internal	adSplit Internal Function
diana2means	2-Means with Hierarchical Initialization
drawRandomPS	Draw sets of probe-sets
print.split	Print Information on Single Splits
print.splitSet	Print Summaries for splitSets
randomDiana2means	Generate null-distributions of DLD-scores
makeEID2PROBESenv	Generate EID2PROBES environment
image.splitSet	Illustrate Split Sets
No Results!

Last year downloads

Details

Date	2010-04-21
LazyLoad	yes
URL	http://compdiag.molgen.mpg.de/software/index.shtml
License	GPL (>= 2)
biocViews	Microarray, Clustering

imports	AnnotationDbi , Biobase (>= 1.5.12) , cluster (>= 1.9.1) , GO.db (>= 1.8.1) , graphics , grDevices , KEGG.db (>= 1.8.1) , multtest (>= 1.6.0) , stats (>= 2.1.0)
suggests	golubEsets (>= 1.0) , hu6800.db (>= 1.8.1) , vsn (>= 1.5.0)
depends	methods (>= 2.1.0) , R (>= 2.1.0)
Contributors	Joern Toedling, Claudio Lottaz

adSplit v1.38.0

Annotation-Driven Clustering

Functions in adSplit

Last year downloads

Details

Include our badge in your README

`[![Rdoc](http://www.rdocumentation.org/badges/version/adSplit)](http://www.rdocumentation.org/packages/adSplit)`