Lower level function that writes data and captures the file information within dependency object
Write object and capture file information
Read data and capture the file information within dependency object
Loads a single R object from file for a R Shiny app
Tracks files that read by functions not in adapr and captures the file information within dependency object
Digest files from (digest package)
Write object and capture file information
Installs and loads library specific to a project
Lower level function that reads data and capture the file information within dependency object
Add R package to a project
Loads R object from archivist repository within the results directory of another adapr Script
Loads a single R object from file
Checks or changes the specified adapr hash algorithm (adaprHashAlgo option)
Browse adapr cheat sheet
Checks the consistency of the dependency directory with the files within the file system
Dependency class
Updates latest adapr from gitHub.
Create first project
Saves R object to archivist repository in results directory of adapr Script
Returns the primary hub file with project location and id information
Browses publication table for editing
Tracks files written by functions not in adapr and captures the file information within dependency object
adapr
Launches Main app
git2r commit class to character converter
Returns character string of adapr R package import dependencies
Git commit of project.
List project file information disk space, modification timespan, days inactive
Checks whether interactive R markdown session is ON
Writes dependency data to file in "Dependency" directory
Check install of package of specific version
Returns the adapr project in R option "adaprProject"
Set up adapr 1st time
Retrieve project swap directory
Identify adapr Home directory. Location of options file and project listing.
Generate condensed information about files from dependency object
Install adapr in a library
adaprInstall.R
Creates a list containing information about a file
Checks the consistency of the dependency directory with the files within the file system.
Reports the source scripts that need to be updated.
Create source file directories
Produces subgraph of dependencies of R script
Returns project's data directory, allows relative directories. Used within an R script.
Retrieve the file info for the file by name OR from the data subdirectory data
Given source_info object, retrieves project information
Acquire all dependencies related to a project,
Generate graph of project dependencies,
Get all file information related to project
git commit. Requires git installation.
Configure user.name and email for git.
Checks the consistency of the dependency directory with the files within the file system
Reports the source scripts that need to be updated!
Initiate git
Identify git provenance of file within a project
Creates an Rmarkdown file in specified directory
Import selected file into the project data directory
Make plot of project programs only
Summarize all programs. Sync status is assessed and indicated.
Read result filepaths to publish
Git ignore the library file
Retrun time of file system
Retrieves the information from git about a file
Get library for a project
initialize_dependency_info
Initializes dependency object source_info
Install package of specific version
Given Project id, Return project directory
This function is no longer supported. Loads libraries within the file library.list.file
Given Project name, Return project publish directory
Creates an graph object from a dependency object
Returns the primary hub file with project location and id information
Find path for git executable
git add to stage the file
Make plot of project programs only
Summarize all programs. Sync status is assessed and indicated.
Return function for reading common file types
Given Project name, Return project library directory
Return function for writing common file types
initialize project
Returns the information related to the adapr script
Create adaprTest example project
Identifies dependencies in a DAG
Loads a single R object from file, more flexible than Load.branch or base::load
Install package of specific version
Checks git configuration. Requires git installation
Installs all packages
Performes git history search
Generates the shell of a code that is project specific
Lists the branches available for loading in the adapr project
Make.summary graph of projects based on files in dependency directory
Experimental (use with caution) track parallelSync while in progress
Lists the data files available for reading in the adapr project
Browses orchard in file system
Generates the shell of a R function that is project specific in support_functions folder
Read library file
Lower level function that captures packages that are explicitly loaded, not loaded automatically
Returns the source files needed to repair synchrony
Makes HTML hyper link
Opens script from a project with default R program. Can open markdown files as well.
List projects
Experimental (use with caution) parallel syncrhonization of project. Takes advantage of directed acyclic graph structure to run R script processes in parallel.
Lists the R scripts in the adapr project
Make plot of network within html documents.
Summarize all programs.
Make a readme file at top project directory
copy to target.directory
Uses pander and pandoc unlike project_report
initialize project
Create program io table
changes project directory/publish directory/library locataion or identifies imported project
Initializes dependency object source_info
Remove R package to a project
Project directory tree structure
contains the relative directory structure
included analysis, data, texidr, dependency.dir, support functions, and library bank
locations
Produces script only subgraph
Make plot of network within html documents.
Summarize all programs.
Create source_info from project.id
Synchronize project by IDENTIFYING necessary R scripts
Updates the project list file to include project specific libraries.
Lower level function that generates the shell of a code that is project specific
Location of options file and project listing. Swap / for \ in path expand.
Create project hub files in root directory
Partial project synchronization of dependencies to an Rscript. Runs only scripts needed for synchronization.
Lower level function that reads the script dependcy data from file
Read in results to publish & Copies results to the project's publication directory
Collect trees from dependency directory
Renders and Rmarkdown file
Run an R script within a project using devtools::clean_source
Make plot of network within html documents.
Summarize all programs.
Runs all source files within the directory source.directory
Searches R scripts and R markdown files within a project.
Copy dependent programs to swap directory
Opens results directory of project or R script within a project
Lower level function that writes the dependency object to file
Lower level function that synchronizes project by running necessary R scripts. Loads from source_info list.
Lower level function that that changes project directory/publish directory or identifies imported project
Returns project's results directory, allows relative directories. Only used within an R script, after create_source_file_dir.
Tests the synchrony of files in dependency tree
Lower level function that collects all trees in dependency.dir and changes the project path
Tests the synchrony of files in dependency tree
Returns Modifies the primary adapr option file
Lower level function that takes list of dependency file data and changes the project path
Make project graph with sync status already computed.
Checks the synchronization project and runs scripts needed for synchronization
Removes project from orchard, but doesn't delete project from file system
Lower level function that tests the synchrony of files in dependency tree given project information.
Remove an R script from a project. Removes program, dependency, and results.
Copy dependent programs to swap directory
Checks or changes the specified adapr project in R option "adaprProject"
Opens project directory
Lower level function that checks the synchrony of source files and their created objects