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adapt3 (version 1.0.1)

Adaptive Dynamics and Community Matrix Model Projections

Description

Runs projections of groups of matrix projection models (MPMs), allowing density dependence mechanisms to work across MPMs. This package was developed to run both adaptive dynamics simulations such as pairwise and multiple invasibility analyses, and community projections in which species are represented by MPMs. All forms of MPMs are allowed, including integral projection models (IPMs). Also includes individual-based modeling (IBM) versions of these.

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Install

install.packages('adapt3')

Monthly Downloads

184

Version

1.0.1

License

GPL (>= 2)

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Maintainer

Richard P. Shefferson

Last Published

July 16th, 2025

Functions in adapt3 (1.0.1)

trait_axis

Create a Data Frame of Trait Data for Invasion Analysis
plot.adaptProj

Create Plot of Community Projection
ta_skeleton

Create Skeleton Data Frame for Trait Variation for Invasion Analysis
cypa_data

Demographic Dataset of Cypripedium parviflorum Population, in Horizontal Format
invade3

Run Pairwise and Multiple Invasion Analysis
project3

Project Multiple MPMs With or Without Density Dependence
equiv_input

Create an Equivalence Vector for Each Population
adapt3-package

Adaptive Dynamics and Community Matrix Model Projections
plot.adaptInv

Create Contour Plot of Pairwise Invasibility Analysis Results
summary.adaptInv

Summarize adaptInv Objects
summary.adaptProj

Summarize adaptProj Objects