AntibioticPhyloseq

<p>A phyloseq object describing a time course experiment in which
three people two courses of cipro and had their gut microbiomes
sampled. See Dethlefsen and Relman, PNAS (2010), at
https://www.ncbi.nlm.nih.gov/pubmed/20847294 for more details.</p>

Implements adaptive gPCA, as described in: Fukuyama, J. (2017)
<arXiv:1702.00501>. The package also includes functionality for applying
the method to 'phyloseq' objects so that the method can be easily applied
to microbiome data and a 'shiny' app for interactive visualization.

Julia Fukuyama

adaptiveGPCA

AntibioticPhyloseq: Antibiotic time course experiment.

Description

Arguments

Format