AntibioticSmall

<p>This is a smaller version of the <code>AntibioticPhyloseq</code> dataset,
for use in the examples so that the running time isn't so long. It
has the same samples and a randomly selected set of 200 of the
taxa. It is stored as a list with three components: the normalized
OTU abundances (<code>X</code>), the similarity matrix for the taxa
(<code>Q</code>), and the diagonal weight matrix (<code>D</code>, the identity
matrix).</p>

Implements adaptive gPCA, as described in: Fukuyama, J. (2017)
<arXiv:1702.00501>. The package also includes functionality for applying
the method to 'phyloseq' objects so that the method can be easily applied
to microbiome data and a 'shiny' app for interactive visualization.

Julia Fukuyama

adaptiveGPCA

AntibioticSmall: A subset of the antibiotic data

Description

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