likelihood_two_params

Likelihood of data in two-parameter model

internal

Implements adaptive gPCA, as described in: Fukuyama, J. (2017)
<arXiv:1702.00501>. The package also includes functionality for applying
the method to 'phyloseq' objects so that the method can be easily applied
to microbiome data and a 'shiny' app for interactive visualization.

Julia Fukuyama

adaptiveGPCA

Adaptive Generalized PCA

likelihood_two_params function

<dl><dt>r1</dt>
<dd>Coefficient of Q</dd>
<dt>r2</dt>
<dd>Coefficient of Q^(-1) in the noise part.</dd>
<dt>Xtilde</dt>
<dd>The data projected onto the eigenvectors of Q.</dd>
<dt>D</dt>
<dd>The eigenvalues of Q</dd></dl>

Arguments

Likelihood of data in two-parameter model — likelihood_two_params

<dl>

<dt>r1</dt>
<dd>Coefficient of Q</dd>


<dt>r2</dt>
<dd>Coefficient of Q^(-1) in the noise part.</dd>


<dt>Xtilde</dt>
<dd>The data projected onto the eigenvectors of Q.</dd>


<dt>D</dt>
<dd>The eigenvalues of Q</dd>

</dl>

likelihood_two_params: Likelihood of data in two-parameter model

Description

Usage

Value

Arguments