adaptr (version 1.4.0)

plot_status: Plot statuses

Description

Plots the statuses over time of multiple simulated trials (overall or for one or more specific arms). Requires the ggplot2 package installed.

Usage

plot_status(
  object,
  x_value = "look",
  arm = NULL,
  area = list(alpha = 0.5),
  nrow = NULL,
  ncol = NULL
)
# S3 method for trial_results
plot_status(
  object,
  x_value = "look",
  arm = NULL,
  area = list(alpha = 0.5),
  nrow = NULL,
  ncol = NULL
)

Value

A ggplot2 plot object.

Arguments

object

trial_results object, output from the run_trials() function.

x_value

single character string, determining whether the number of adaptive analysis looks ("look", default), the total cumulated number of patients randomised ("total n") or the total cumulated number of patients with outcome data available at each adaptive analysis ("followed n") are plotted on the x-axis.

arm

character vector containing one or more unique, valid arm names, NA, or NULL (default). If NULL, the overall trial statuses are plotted, otherwise the specified arms or all arms (if NA is specified) are plotted.

area

list of styling settings for the area as per ggplot2 conventions (e.g., alpha, linewidth). The default (list(alpha = 0.5)) sets the transparency to 50% so overlain shaded areas are visible.

nrow, ncol

the number of rows and columns when plotting statuses for multiple arms in the same plot (using faceting in ggplot2). Defaults to NULL, in which case this will be determined automatically where relevant.

See Also

plot_history().

Examples

#### Only run examples if ggplot2 is installed ####
if (requireNamespace("ggplot2", quietly = TRUE)){

  # Setup a trial specification
  binom_trial <- setup_trial_binom(arms = c("A", "B", "C", "D"),
                                   control = "A",
                                   true_ys = c(0.20, 0.18, 0.22, 0.24),
                                   data_looks = 1:20 * 100)

  # Run multiple simulation with a fixed random base seed
  res_mult <- run_trials(binom_trial, n_rep = 25, base_seed = 12345)

  # Plot trial statuses at each look according to total allocations
  plot_status(res_mult, x_value = "total n")

}

if (requireNamespace("ggplot2", quietly = TRUE)){

  # Plot trial statuses for all arms
  plot_status(res_mult, arm = NA)

}