ade4 (version 1.2-2)

abouheif.eg: Phylogenies and quantitative traits from Abouheif

Description

This data set gathers three phylogenies with three sets of traits as reported by Abouheif (1999).

Usage

data(abouheif.eg)

source

Data taken from the phylogenetic independence program developped by Ehab Abouheif starting from http://ww2.mcgill.ca/biology/faculty/abouheif/programs.html.

References

Abouheif, E. (1999) A method for testing the assumption of phylogenetic independence in comparative data. Evolutionary Ecology Research, 1, 895--909.

Examples

data(abouheif.eg)
par(mfrow=c(2,2))
symbols.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1,
 sub = "Body Mass (kg)", csi = 2, csub = 2)
symbols.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2,
 sub = "Body Mass (kg)", csi = 2, csub = 2)
dotchart.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1,
 sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft",
  csub = 2, ceti = 1.5)
dotchart.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2,
 sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft",
  csub = 2, ceti = 1.5)
par(mfrow = c(1,1))

w.phy=newick2phylog(abouheif.eg$tre3)
dotchart.phylog(w.phy,abouheif.eg$vec3, clabel.n = 1)