ade4 (version 1.2-2)

njplot: Phylogeny and trait of bacteria

Description

This data set describes the phylogenety of 36 bacteria as reported by Perri�re and Gouy (1996). It also gives the GC rate corresponding to these 36 species.

Usage

data(njplot)

format

njplot is a list containing the 2 following objects: tre{is a character string giving the fission tree in Newick format.} tauxcg{is a numeric vector that gives the CG rate of the 36 species.}

source

Data were obtained by Manolo Gouy [e-mail]

References

Perri�re, G. and Gouy, M. (1996) WWW-Query : an on-line retrieval system for biological sequence banks. Biochimie, 78, 364--369.

Examples

data(njplot)
njplot.phy <- newick2phylog(njplot$tre)
par(mfrow = c(2,1))
tauxcg0 <- njplot$tauxcg - mean(njplot$tauxcg)
symbols.phylog(njplot.phy, squares = tauxcg0)
symbols.phylog(njplot.phy, circles = tauxcg0)
par(mfrow = c(1,1))