ade4 (version 1.2-2)

taxo.eg: Examples of taxonomy

Description

This data sets contains two taxonomies.

Usage

data(taxo.eg)

source

Dol�dec, S., Chessel, D., Ter Braak,C. J. F. and Champely S. (1996) Matching species traits to environmental variables: a new three-table ordination method. Environmental and Ecological Statistics, 3, 143--166.

Details

Variables of the first data frame are : genre (a factor genre with 8 levels), famille (a factor familiy with 5 levels) and ordre (a factor order with 2 levels). Variables of the second data frame are : gen(a factor genre with 29 levels), fam (a factor family with 19 levels).

Examples

data(taxo.eg)
taxo.eg[[1]]
as.taxo(taxo.eg[[1]])
class(taxo.eg[[1]])
class(as.taxo(taxo.eg[[1]]))

tax.phy <- taxo2phylog(as.taxo(taxo.eg[[1]]))
plot.phylog(tax.phy,clabel.l=1)

par(mfrow = c(1,2))
table.phylog(tax.phy$Bindica,tax.phy)
table.phylog(tax.phy$Bscores,tax.phy)
par(mfrow = c(1,1))

radial.phylog(taxo2phylog(as.taxo(taxo.eg[[2]])))