ade4 (version 1.7-5)

microsatt: Genetic Relationships between cattle breeds with microsatellites

Description

This data set gives genetic relationships between cattle breeds with microsatellites.

Usage

data(microsatt)

Format

microsatt is a list of 4 components.

Source

Extract of data prepared by D. Laloë from data used in: Moazami-Goudarzi, K., D. Laloë, J. P. Furet, and F. Grosclaude (1997) Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites. Animal Genetics, 28, 338--345. Souvenir Zafindrajaona, P.,Zeuh V. ,Moazami-Goudarzi K., Laloë D., Bourzat D., Idriss A., and Grosclaude F. (1999) Etude du statut phylogénétique du bovin Kouri du lac Tchad à l'aide de marqueurs moléculaires. Revue d'Elevage et de Médecine Vétérinaire des pays Tropicaux, 55, 155--162. Moazami-Goudarzi, K., Belemsaga D. M. A., Ceriotti G., Laloë D. , Fagbohoun F., Kouagou N. T., Sidibé I., Codjia V., Crimella M. C., Grosclaude F. and Touré S. M. (2001) Caractérisation de la race bovine Somba à l'aide de marqueurs moléculaires. Revue d'Elevage et de Médecine Vétérinaire des pays Tropicaux, 54, 1--10.

References

See a data description at http://pbil.univ-lyon1.fr/R/pdf/pps055.pdf (in French).

Examples

## Not run: 
# data(microsatt)
# fac <- factor(rep(microsatt$loci.names, microsatt$loci.eff))
# w <- dudi.coa(data.frame(t(microsatt$tab)), scann = FALSE)
# wit <- wca(w, fac, scann = FALSE)
# microsatt.ktab <- ktab.within(wit)
# 
# plot(sepan(microsatt.ktab)) # 9 separated correspondence analyses
# plot(mcoa(microsatt.ktab, scan = FALSE))
# plot(mfa(microsatt.ktab, scan = FALSE))
# plot(statis(microsatt.ktab, scan = FALSE))
# ## End(Not run)