ade4 (version 1.7-5)

palm: Phylogenetic and quantitative traits of amazonian palm trees

Description

This data set describes the phylogeny of 66 amazonian palm trees. It also gives 7 traits corresponding to these 66 species.

Usage

data(palm)

Format

palm is a list containing the 2 following objects:

Source

This data set was obtained by Clémentine Gimaret-Carpentier.

Details

Variables of palm$traits are the following ones: rord: specific richness with five ordered levels h: height in meter (squared transform) dqual: diameter at breast height in centimeter with five levels sout : subterranean, d1(0, 5 cm), d2(5, 15 cm), d3(15, 30 cm) and d4(30, 100 cm) vfruit: fruit volume in $mm^3$ (logged transform) vgrain: seed volume in $mm^3$ (logged transform) aire: spatial distribution area ($km^2$) alti: maximum altitude in meter (logged transform)

Examples

## Not run: 
# data(palm)
# palm.phy <- newick2phylog(palm$tre)
# radial.phylog(palm.phy,clabel.l=1.25)
# 
# orthogram(palm$traits[,4],palm.phy$Bscores)
# dotchart.phylog(palm.phy,palm$traits[,4], clabel.l = 1,
#  labels.n = palm.phy$Blabels, clabel.n = 0.75)
# w <- cbind.data.frame(palm.phy$Bscores[,c(3,4,6,13,21)],
#  scalewt((palm$traits[,4])))
# names(w)[6] <- names(palm$traits[4])
# table.phylog(w, palm.phy, clabel.r = 0.75, f = 0.5)
# 
# gearymoran(palm.phy$Amat, palm$traits[,-c(1,3)])
# ## End(Not run)