Phylogenies and quantitative traits from Abouheif
Spatial pattern analysis in plant communities
Internal ade4 functions
The ade4 package
Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R).
Tests of randomization on the correlation between two distance matrices (in R).
Add graphics to an existing plot
Deprecated functions in ade4
Amount of Evolutionary History
Import data files from Phylogenetic Independance Package
Utility function to test if the package adegraphics is loaded
Codon usage
Analysis of molecular variance
Allelic frequencies in ten honeybees populations at eight microsatellites loci
Bird species distribution
Between-Class RLQ analysis
Between-Class Analysis
Genetics-Ecology-Environment Triple
Between- and within-class double principal coordinate analysis
Fauna Table with double (row and column) partitioning
Graphical Display of Areas
Table of Factors
African Estuary Fishes
Arrivals at an intensive care unit
Taxonomy
Small Ecological Dataset
Genetic variability of Cacadors
Double Weighted Centring
Wine Tasting
Charolais-Zebus
Enzymatic polymorphism in Leuciscus cephalus
Qualitative Weighted Variables
Pair of Variables
Table of Fuzzy Biological Traits
Tests of randomization between distances applied to 'kdist' objetcs
Corvus morphology
Computation of Distance Matrices on Quantitative Variables
Rao's diversity coefficient also called quadratic entropy
Apportionment of Quadratic Entropy
Distribution of Alpine plants in Aravo (Valloire, France)
Ecological Tables Triplet
Genomes of 43 Bacteria
Representation of n values on a circle
Pair of Ecological Tables
Principal Coordinates Analysis
Dune Meadow Data
Transformation to make Euclidean a distance matrix
Road Distances
Taxonomy, phylogenies and quantitative traits of carnivora and herbivora
Enzymatic polymorphism in Mus musculus
Ecological and Biological Traits
Buech basin
Veterinary epidemiological study to assess the risk factors for losses in broiler chickens
Fruit Production
Functions to combine and adjust the outputs 3-table methods
Computation of Distance Matrices for Binary Data
Computation of the Distance Matrix from a Statistical Triplet
Decentred Correspondence Analysis
K-tables Correspondence Analysis with the same rows and the same columns
Functions to compute the fourth-corner statistic
human mitochondrial DNA restriction data
Exam marks for some students
Rao's dissimilarity coefficient
Genetic distances from gene frequencies
Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis
Electoral Data
K-tables of wine-tasting
Triangular Data
Fauna Table for Constrained Ordinations
Between-class coinertia analysis
Cubic Ecological Data
Phylogeny and quantative trait of carnivora
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Monte-Carlo test on a Costatis analysis (in C).
Linear Discriminant Analysis (descriptive statistic)
Discriminant Correspondence Analysis
Maximal value of Rao's diversity coefficient also called
quadratic entropy
Representation of many quantitative variables in front of a phylogenetic tree
Electrocardiogram data
Phylogeny and quantitative traits of carnivora
Frequenting movie theaters in France in 2003
Coinertia Analysis
Computation of the Distance Matrix associated to a Neighbouring Graph
Mixed-variables coefficient of distance
Multiple Correspondence Analysis
Correspondence Analysis
Ordination of Tables mixing quantitative variables and factors
Ordination of Tables mixing quantitative variables and factors
Faunistic K-tables
Point sampling of fish community
Multiple Graphs for the Foucart's Correspondence Analysis
Creation of K-tables from a data frame
Pair of Tables
Decomposition of inertia (i.e. contributions) in multivariate methods
Geary's Irish Data
the class of objects 'kdist' (K distance matrices)
Ecomorphological Convergence
A class of data: tables of populations and alleles
Microsatellites of Galapagos tortoises populations
Is a Distance Matrix Euclidean?
Multiple Graphs for a Multiple Co-inertia Analysis
Fission pattern and heritable morphological traits
Granulometric Curves
Complete regular grid analysis
a way to obtain Euclidean distance matrices
Creating a K-tables from a list of data frames.
Phylogeny and quantitative traits of flowers
Correspondence Analysis Table
Ecological Data : sites-variables, sites-species, where and when
Computation of Distance Matrices of Percentage Data
Double principal coordinate analysis
Duality Diagram
Non symmetric correspondence analysis
Seed dispersal
Multiple Graphs for a Multiple Factorial Analysis
Multiple Graphs for a Partial Triadic Analysis
Process to go from a Within Analysis to a K-tables
Transformation of K distance matrices (object 'kdist') into K Euclidean representations (object 'ktab')
Creation of a K-tables from a list of duality diagrams
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Transformation of a Distance Matrix for becoming Euclidean
Phylogeny and quantitative traits of lizards
Phylogeny and quantitative traits of teleos fishes
Multi Level Decomposition of unidimensional data
Display and summarize multiblock objects
Principal Component Analysis
Reading a table of genetic data (diploid individuals)
Moran's I and Geary'c randomization tests for spatial and phylogenetic autocorrelation
Ecological Data : sites-variables, sites-species, where and when
Multivariate spatial autocorrelation test (in C)
Multivariate spatial autocorrelation test
Maximal or minimal amount of originality saved under optimal conditions
Genetic/Environment and types of variables
Assemblages of Macroinvertebrates in the Loire River (France)
Phyto-Ecological Survey
Multiple CO-inertia Analysis
Multiple Double Principal Coordinate Analysis
Faunistic Communities and Sampling Experiment
Global State of the World in 1984
Oribatid mite
Originality of a species
Phylogenetic and quantitative traits of amazonian palm trees
Taxonomy and quantitative traits of carnivora
Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R).
Genetic Variation In Human Populations
Contingency Table
K-tables Multi-Regions
Ponds in a nature reserve
Multivariate spatial analysis
Non-linear Iterative Partial Least Squares (NIPALS) algorithm
Phylogeny and trait of bacteria
Orthonormal decomposition of variance
Partial Triadic Analysis of a K-tables
Bootstrap simulations
Bootstraped simulations for multiblock methods
Class of the Permutation Tests (in C).
the class of objects 'ktab' (K-tables)
Landmarks
Wine Tasting
Orthonormal basis for orthonormal transform
Simplified Analysis in Principal Coordinates
Distribution of of tropical trees along the Panama canal
Simple Procruste Rotation between two sets of points
Generic Function for Multiple Graphs in a K-tables Analysis
Multiple Graphs for Separated Analyses in a K-tables
Multiple Graphs of a STATIS Analysis
Mantel test (correlation between two distance matrices (in C).)
Mantel test (correlation between two distance matrices (in R).)
Multiple Factorial Analysis
Genetic Relationships between cattle breeds with microsatellites
Neighbourhood Graphs
Multiblock principal component analysis with instrumental variables
Multiblock partial least squares
Athletes' Morphology
Minimal Spanning Tree
Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C).
Transformation of a distance matrice to a Euclidean one
Nee and May's random process
A table of Qualitative Variables
Plant traits response to grazing
Between-Class Analysis
Class of the Permutation Tests (in C).
Ordination Table
Reconstitution of Data from a Duality Diagram
Display of a scatterplot and its two marginal histograms
Graph of a variable using image and contour
RLQ analysis
Avifauna and Vegetation
Plot of the factorial maps with polygons of contour by level of a factor
Plot of factorial maps with representation of point classes
Compute or scale data using (weighted) means, variances and
covariances (possibly for the levels of a factor)
Graphical utility functions
Representation of the link between a variable and a set of qualitative variables
Separated Analyses in a K-tables
Morphometric Evolution
Projections of Supplementary Rows
Indirect Ordination
Array of Recapture of Rings
Plot of the Factorial Maps
Plot of the factorial maps for a fuzzy correspondence analysis
Graphical representation of the outputs of a multivariate analysis
1D plot of a pair of numeric scores with labels
Graph to Analyse the Relation between a Score and Quantitative Variables
Projections of Supplementary Columns
Projection of additional items in a PCO analysis
Phylogenetic trees in Newick format
Olympic Decathlon
Nee and May's optimizing process
Permutation tests on an analysis of molecular variance (in C).
Genetic structure of two nitrogen fixing bacteria influenced
by geographical isolation and host specialization
Physico-Chemistry Data
Representation of a quantitative variable in front of a phylogenetic tree
Plot of the arrays by grey levels
Plot arrays in front of a phylogenetic tree
Plot of the Arrays
Mountain Avifauna
Triangular Plotting
Pair of Ecological Data
Scatter Plot with Kernel Density Estimate
Scatter Plot
Scatterplot of two sets of coordinates and a partionning into classes
Graph of frequency profiles (useful for instance in genetic)
Phylogeny and quantitative traits of flowers
Morphological Study of the Painted Turtle
Within-Class RLQ analysis
Freshwater fish zoogeography in west Africa
Plant assemblages in woodlands of the conurbation of Angers (France)
French Worker Survey (1970)
Distance Matrices
Road distances in New-Zealand
1D plot of a numeric score and a factor with labels
Representation by mean- standard deviation of a set of weight distributions on a numeric score
Reciprocal scaling after a correspondence analysis
Graphs to Analyse a factor in a Mixed Analysis
Create phylogeny
Method to Analyse a pair of tables : Environmental and Faunistic Data
Principal component analysis with respect to instrumental variables
Contingency Table with a partition in Molecular Biology
Phylogeny
Plot phylogenies
Within-Class Analysis
Principal Component Analysis with respect to orthogonal instrumental variables
Results of the French presidential elections of 2002
Phylogeny and quantitative traits of birds
Monte-Carlo Test on the between-groups inertia percentage (in C).
Monte-Carlo test on a Co-inertia analysis (in C).
Monte-Carlo Test on the percentage of explained (i.e.
constrained) inertia
Two-fold cross-validation
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Monte-Carlo test on a Statico analysis (in C).
Plot of Contingency Tables
Graph Display for Distance Matrices
The phylogenetic ANOVA
Partition of the variation of a response multivariate table by 2 explanatory tables
Within-Class Analysis
Monte-Carlo Test on a Discriminant Analysis (in C).
Permutation test for double principal coordinate analysis (DPCoA)
Class of the Permutation Tests (in R).
Monte-Carlo Test on the between-groups inertia percentage (in R).
Plot of the factorial maps of a correlation circle
Monte-Carlo Test on a Discriminant Analysis (in R).
Plot of the factorial maps for the projection of a vector basis
Trajectory Plot
Representation of a value in a graph
Relationships between one score and qualitative variables
1D plot of a numeric score with labels
Within-class coinertia analysis
Graphs to Analyse a factor in PCA
Students and Subjects
STATIS, a method for analysing K-tables
Transect in the Vegetation
Plot of a frequency distribution
Representation of an object in a graph by a picture
Plot of Paired Coordinates
Plot of the factorial maps in a Multiple Correspondence Analysis
Plot of the factorial maps for a correspondence analysis
Graphs for One Dimension
Graphs to study one factor in a Multiple Correspondence Analysis
Selection of the number of dimension by two-fold cross-validation for multiblock methods
Tinto and Odiel estuary geochemistry
Phylogeny and quantitative traits of ungulates.
Elimination of Duplicated Rows in a Array
Vegetation in Trois-Fontaines
Example for Centring in PCA
Two Questions asked on a Sample of 1000 Respondents
Average temperatures of 30 French cities
Examples of taxonomy
Function to perform a test of dimensionality
Homogeneous Table
Triangular Representation and Groups of points
Normed within principal component analysis
Internal Correspondence Analysis