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adegenet (version 1.0-2)
Genetic data handling for multivariate analysis using ade4
Description
Classes and functions for genetic data analysis within the multivariate framework.
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Install
install.packages('adegenet')
Monthly Downloads
14,047
Version
1.0-2
License
GPL version 2 or newer
Maintainer
Thibaut Jombart
Last Published
February 7th, 2025
Functions in adegenet (1.0-2)
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export
Conversion functions from adegenet to other R packages
dist.genpop
Genetic distances between populations
adegenet-package
Genetic data handling for multivariate analysis
genpop
adegenet class for allele counts in populations
Auxiliary functions
Utilities functions
HWE.test.genind
Hardy-Weinberg Equilibrium test for multilocus data
nancycats
Microsatellites genotypes of 237 cats from 17 colonies of Nancy (France)
microbov
Microsatellites genotypes of 15 cattle breeds
genind
adegenet class for individual genotypes
import
Conversion function for adegenet
sim2pop
Simulated genotypes of two georeferenced populations
chooseCN
Function to choose a connection network
monmonier
Boundary detection using Monmonier algorithm
makefreq
Function to generate allelic frequencies
gstat.randtest
Goudet's G-statistic Monte Carlo test for genind object