indInfo-class

popInfo-class

gen-class

callOrNULL-class

charOrNULL-class

factorOrNULL-class

intOrNum-class

listOrNULL-class

intOrNULL-class

dfOrNULL-class

formOrNULL-class

These virtual classes are only for internal use in adegenet

classes

virtualClasses

Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.

Zhian N. Kamvar

adegenet

Exploratory Analysis of Genetic and Genomic Data

Thibaut Jombart

Caitlin Collins

Roman Lustrik

Marie-Pauline Beugin

Brian J. Knaus

Peter Solymos

Vladimir Mikryukov

Klaus Schliep

Tiago Maié

Libor Morkovsky

Ismail Ahmed

Anne Cori

Federico Calboli

RJ Ewing

Frédéric Michaud

Rebecca DeCamp

Alexandre Courtiol

Lindsay V. Clark

Pavel Dimens

Max Coulter

Ivan Krylov

virtualClasses function

A virtual Class: No objects may be created from it.

Objects from the Class

Thibaut Jombart <a href="/link/t.jombart%40imperial.ac.uk?package=adegenet&version=2.1.11" data-mini-rdoc="adegenet::t.jombart@imperial.ac.uk">t.jombart@imperial.ac.uk</a>

Author

Virtual classes for adegenet — virtualClasses

Thibaut Jombart <a href='mailto:t.jombart@imperial.ac.uk'>t.jombart@imperial.ac.uk</a>

Virtual classes for adegenet

virtualClasses: Virtual classes for adegenet

Description

Arguments

Objects from the Class

Author