
This data set describes the phylogeny of 19 birds as reported by Bried et al. (2002). It also gives 6 traits corresponding to these 19 species.
procella
is a list containing the 2 following objects:
is a character string giving the phylogenetic tree in Newick format.
is a data frame with 19 species and 6 traits
Variables of procella$traits
are the following ones:
- site.fid:
a numeric vector that describes the percentage of site fidelity
-
mate.fid: a numeric vector that describes the percentage of mate fidelity
- mass: an integer vector that describes the adult body weight (g)
- ALE:
a numeric vector that describes the adult life expectancy (years)
- BF: a
numeric vector that describes the breeding frequencies
- col.size: an
integer vector that describes the colony size (no nests monitored)
Bried, J., Pontier, D. and Jouventin, P. (2002) Mate fidelity in monogamus birds: a re-examination of the Procellariiformes. Animal Behaviour, 65, 235--246.
See a data description at http://pbil.univ-lyon1.fr/R/pdf/pps037.pdf (in French).
if(require(ape) && require(phylobase)){
## load data, make tree and phylo4d object
data(procella)
tre <- read.tree(text=procella$tre)
x <- phylo4d(tre, procella$traits)
oldpar <- par(mar=rep(.1,4))
table.phylo4d(x,cex.lab=.7)
par(oldpar)
}
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