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adhoc (version 1.0)

calculate ad hoc distance thresholds for DNA barcoding identification

Description

An ad hoc distance threshold can be calculated for each particular reference library of DNA barcodes. Specimen identification at this ad hoc distance threshold (using the best close match method) will produce identifications with an estimated relative error probability that can be fixed by the user (e.g. 5%)

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Version

Install

install.packages('adhoc')

Monthly Downloads

19

Version

1.0

License

GPL (>= 2)

Maintainer

Gontran Sonet

Last Published

December 13th, 2013

Functions in adhoc (1.0)

adhocTHR

Calculation of an ad hoc distance threshold for DNA barcoding identification
tephdata

DNA sequences of Tephritids to use as an example dataset for package adhoc.
adhoc-package

Calculation of ad hoc distance thresholds for DNA barcoding identification.
checkDNAbcd

Evaluation of a reference library of aligned DNA barcodes