keep_transitions

data

<p>Path to an output snp file with coordinates of excluded sites.</p>

outfile

<p>Remove substitutions that are more likely to be a result of ancient DNA
damage (C-&gt;T and G-&gt;A substitutions).</p>

An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.

keep_transitions: Remove transversions (C->T and G->A substitutions)

Description

Usage

Arguments

Value