merge_eigenstrat

Prefix of the path to the merged EIGENSTRAT snp/ind/geno trio.

merged

a, b

Deal with potential strand issues? Mostly for historic reasons. For details see the README of ADMIXTOOLS convertf.

strandcheck

This function utilizes the 'mergeit' command distributed in ADMIXTOOLS.

An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.

merge_eigenstrat: Merge two sets of EIGENSTRAT datasets

Description

Usage

Arguments