admixr (version 0.9.2)

loginfo: Print the full log output of an admixr wrapper to the console.

Description

Print the full log output of an admixr wrapper to the console.

Usage

loginfo(x, target = NA, save = FALSE, prefix = NA, dir = ".", suffix = ".txt")

Arguments

x

Output from one of the admixr wrappers (d, f4, qpAdm, ...)

target

A specific log to examine (relevant for multiple target qpAdm runs)

save

Save the log output to a disk?

prefix

Prefix of the output log file(s) (name of the admixr command by default)

dir

In which directory to save the log file(s)?

suffix

Suffix of the output log file(s) (".txt" by default)

Examples

if (FALSE) # download an example genomic data set and prepare it for analysis
snps <- eigenstrat(download_data(dirname = tempdir()))

# define a set of populations to analyze and calculate a D statistic
pops <- c("French", "Sardinian", "Han", "Papuan", "Khomani_San", "Mbuti", "Dinka")
result_d <- d(
    W = pops, X = "Yoruba", Y = "Vindija", Z = "Chimp",
    data = snps
)

# examine the full log output associated with the returned object
loginfo(result_d)