read_ind

read_snp

read_geno

These functions each read one part of the EIGENSTRAT dataset trio.

An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://github.com/dreichlab/admixtools>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.

Martin Petr

admixr

An Interface for Running 'ADMIXTOOLS' Analyses

read_ind function

<dl><dt>data</dt>
<dd>EIGENSTRAT data object.</dd>
<dt>exclude</dt>
<dd>Read the list of excluded SNPs?</dd></dl>

Arguments

Read an EIGENSTRAT ind/snp/geno file. — read_ind

<dl>

<dt>data</dt>
<dd>EIGENSTRAT data object.</dd>


<dt>exclude</dt>
<dd>Read the list of excluded SNPs?</dd>

</dl>

read_ind: Read an EIGENSTRAT ind/snp/geno file.

Description

Usage

Value

Arguments

Details