arrangeCelFilesByChipType

A <code><a rd-options="base" href="/link/character?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::character">character</a></code> <code><a rd-options="base" href="/link/vector?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of CEL pathnames to be moved.

pathnames

A <code><a rd-options="base" href="/link/character?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::character">character</a></code> string specifying the root output directory,
    which in turn will contain chip-type subdirectories.
    All directories will be created, if missing.

path

A named <code><a rd-options="base" href="/link/character?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::character">character</a></code> string with chip type aliases.
    For instance, <code>aliases=c("Focus"="HG-Focus")</code> will treat
    a CEL file with chiptype label 'Focus' (early-access name) as
    if it was 'HG-Focus' (offical name).

aliases


 Moves CEL files to subdirectories with names corresponding to the chip types according to the CEL file headers.
 For instance, a HG_U95Av2 CEL file with pathname "data/foo.CEL"
 will be moved to subdirectory <code>celFiles/HG_U95Av2/</code>.


internal

programming

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).  It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK.  Both ASCII- and binary-based files are supported.  Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL).  These files can be read either in full or in part.  For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Kasper Daniel Hansen

affxparser

Affymetrix File Parsing SDK

arrangeCelFilesByChipType function

A <code><a href="character" rd-options="base">character</a></code> <code><a href="vector" rd-options="base">vector</a></code> of CEL pathnames to be moved.

A <code><a href="character" rd-options="base">character</a></code> string specifying the root output directory,
    which in turn will contain chip-type subdirectories.
    All directories will be created, if missing.

A named <code><a href="character" rd-options="base">character</a></code> string with chip type aliases.
    For instance, <code>aliases=c("Focus"="HG-Focus")</code> will treat
    a CEL file with chiptype label 'Focus' (early-access name) as
    if it was 'HG-Focus' (offical name).

Moves CEL files to subdirectories with names corresponding to the chip types according to the CEL file headers.
 For instance, a HG_U95Av2 CEL file with pathname "data/foo.CEL"
 will be moved to subdirectory <code>celFiles/HG_U95Av2/</code>.

arrangeCelFilesByChipType: Moves CEL files to subdirectories with names corresponding to the chip types

Description

Usage

Arguments

Value

See Also