cdfMergeAlleles

A <code><a rd-options="base" href="/link/list?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::list">list</a></code> structure with groups.

groups

If <code><a rd-options="base:logical" href="/link/TRUE?package=affxparser&version=1.44.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, the group names, which typically are
   names for bases, are turned into their complementary bases for the
   reverse strand.

compReverseBases

The <code><a rd-options="base" href="/link/character?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::character">character</a></code> string used to collapse the allele A
   and the allele B group names.

collapse


 Function to join CDF allele A and allele B groups strand by strand.<p></p><p> This <code><a rd-options="base" href="/link/function?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::function">function</a></code> is design to be used with <code><a rd-options="" href="/link/applyCdfGroups?package=affxparser&version=1.44.0" data-mini-rdoc="affxparser::applyCdfGroups">applyCdfGroups</a></code>()
 on an Affymetrix Mapping (SNP) CDF <code><a rd-options="base" href="/link/list?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::list">list</a></code> structure.
</p>

internal

programming

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).  It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK.  Both ASCII- and binary-based files are supported.  Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL).  These files can be read either in full or in part.  For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Kasper Daniel Hansen

affxparser

Affymetrix File Parsing SDK

cdfMergeAlleles function

A <code><a href="list" rd-options="base">list</a></code> structure with groups.

If <code><a href="TRUE" rd-options="base:logical">TRUE</a></code>, the group names, which typically are
   names for bases, are turned into their complementary bases for the
   reverse strand.

The <code><a href="character" rd-options="base">character</a></code> string used to collapse the allele A
   and the allele B group names.

Function to join CDF allele A and allele B groups strand by strand.

 This <code><a href="function" rd-options="base">function</a></code> is design to be used with <code><a href="applyCdfGroups" rd-options="">applyCdfGroups</a></code>()
 on an Affymetrix Mapping (SNP) CDF <code><a href="list" rd-options="base">list</a></code> structure.

cdfMergeAlleles: Function to join CDF allele A and allele B groups strand by strand

Description

Usage

Arguments

Value

Details

References

See Also