readBpmap(filename, seqIndices = NULL, readProbeSeq = TRUE, readSeqInfo
= TRUE, readPMXY = TRUE, readMMXY = TRUE, readStartPos = TRUE,
readCenterPos = FALSE, readStrand = TRUE, readMatchScore = FALSE,
readProbeLength = FALSE, verbose = 0)
readBpmapHeader(filename)
readBpmapSeqinfo(filename, seqIndices = NULL, verbose = 0)
NULL
, the entire file is being read.readBpmap
: A list of lists, one list for every sequence
read. The components of
the sequence lists, depends on the argument of the function call. For
readBpmapheader
a list with two components version
and
numSequences
. For readBpmapSeqinfo
a list of lists
containing the sequence info.
readBpmap
reads a BPMAP file, which is a binary file containing
information about a given probe's location in a sequence.
Here sequence means some kind of reference sequence, typically a
chromosome or a scaffold. readBpmapHeader
reads the header of
the BPMAP file, and readBpmapSeqinfo
reads the sequence info of
the sequences (so this function is merely a convinience function).
tpmap2bpmap
for information on how to write
Bpmap files.