readCdfIsPm

filename

An <code><a rd-options="base" href="/link/integer?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::integer">integer</a></code> <code><a rd-options="base" href="/link/vector?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::vector">vector</a></code> of unit indices specifying which units
    to be read.  If <code><a rd-options="base" href="/link/NULL?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::NULL">NULL</a></code>, all units are read.

units

An <code><a rd-options="base" href="/link/integer?package=affxparser&version=1.44.0&to=base" data-mini-rdoc="base::integer">integer</a></code> specifying the verbose level. If 0, the
    file is parsed quietly.  The higher numbers, the more details.

verbose


  Checks if cells in a CDF file are perfect-match probes or not.


internal

file

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).  It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK.  Both ASCII- and binary-based files are supported.  Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL).  These files can be read either in full or in part.  For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Kasper Daniel Hansen

affxparser

Affymetrix File Parsing SDK

readCdfIsPm function

An <code><a href="integer" rd-options="base">integer</a></code> <code><a href="vector" rd-options="base">vector</a></code> of unit indices specifying which units
    to be read.  If <code><a href="NULL" rd-options="base">NULL</a></code>, all units are read.

An <code><a href="integer" rd-options="base">integer</a></code> specifying the verbose level. If 0, the
    file is parsed quietly.  The higher numbers, the more details.

Checks if cells in a CDF file are perfect-match probes or not.

readCdfIsPm: Checks if cells in a CDF file are perfect-match probes or not

Description

Usage

Arguments

Value