Usage
read.probematrix(..., filenames = character(0), phenoData = new("AnnotatedDataFrame"), description = NULL, notes = "", compress = getOption("BioC")$affy$compress.cel, rm.mask = FALSE, rm.outliers = FALSE, rm.extra = FALSE, verbose = FALSE, which = "pm", cdfname = NULL)
Arguments
...
file names separated by comma.
filenames
file names in a character vector.
compress
are the CEL files compressed?
rm.mask
should the spots marked as 'MASKS' set to NA?
rm.outliers
should the spots marked as 'OUTLIERS' set to NA?
rm.extra
if TRUE, overrides what is in rm.mask and
rm.oultiers.
which
should be either "pm", "mm" or "both".
cdfname
Used to specify the name of an alternative cdf package.
If set to NULL, the usual cdf package based on Affymetrix's
mappings will be used.