MAplot

MAplot,PLMset-method

A vector to plot along the horizonal axis

A set of indices to use when drawing the loess curve

subset

If true some summary statistics of the M values
    are drawn

show.statistics

span

<code>"guassian"</code> or <code>"symmetric"</code> as in
    <code><a rd-options="stats" href="/link/loess?package=affyPLM&version=1.48.0&to=stats" data-mini-rdoc="stats::loess">loess</a></code>.

family.loess

Size of text when writing summary statistics on plot


  Create boxplots of M or M vs A plots. Where M is determined relative
  to a specified chip or to a pseudo-median reference chip.


hplot

A package that extends and improves the functionality of
the base affy package. Routines that make heavy use of
compiled code for speed. Central focus is on implementation of
methods for fitting probe-level models and tools using these
models. PLM based quality assessment tools.

B M Bolstad

affyPLM

Methods for fitting probe-level models

MAplot function

<code>"guassian"</code> or <code>"symmetric"</code> as in
    <code><a href="loess" rd-options="stats">loess</a></code>.

Create boxplots of M or M vs A plots. Where M is determined relative
  to a specified chip or to a pseudo-median reference chip.

MAplot: Relative M vs. A plots

Description

Usage

Arguments

See Also