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affyPara (version 1.32.0)

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Description

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

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Version

Version

1.32.0

License

GPL-3

Maintainer

Markus Schmidberger

Last Published

February 15th, 2017

Functions in affyPara (1.32.0)

bgCorrectPara

Parallelized Background Correction
distributeFiles

Distribute files to slaves
readAffybatchPara

Parallelized Read-AffyBatch function
computeExprSetPara

Parallel generate a set of expression values
splitObjects

Functions to split objects into parts
normalizeAffyBatchConstantPara

Parallelized scaling normalization
mergeSplitObjects

Merge a list of split objects
normalizeAffyBatchLoessIterPara

Parallelized partial loess normalization with permutation
boxplotPara

Parallelized Box Plots for Microarray Data
normalizeAffyBatchInvariantsetPara

Parallelized Invariante Set normalization
rmaPara

Parallelized PMA preprocessing
snow-startstop

Starting and Stopping SNOW Clusters
vsnInputPara

Class to contain input data and parameters for parallel vsn functions
preproPara

Parallelized preprocessing
vsnPara

Parallel fir of the vsn model
removeDistributedFiles

Remove distributed files from slaves
qa

Parallel Quality Assessment Summary
normalizeAffyBatchQuantilesPara

Parallelized quantile normalization
MAplotPara

Parallelized relative M vs. A plots for Microarray Data
normalizeAffyBatchLoessPara

Parallelized loess normalization