affyQCReport (version 1.50.0)

QCReport: QC Report for AffyBatch objects

Description

Creates a QC report for an object of class AffyBatch.

Usage

QCReport(object,file="AffyQCReport.pdf",...)

Arguments

object

An object of class AffyBatch.

file

A valid filename for the output PDF file.

...

further arguments for plot function.

Value

TRUE

Details

This creates a 6 page QC report in PDF file format.

• The default output file is AffyQCReport.pdf created in the working directory.
• The AffyBatch object is not required to contain phenotypic data but that data is used if available.
• The CDF environment must be available for the method to work fully.

More details are available in the vignette.

Examples

  ## Not run: 
#      
#     library(affydata)
#     data(Dilution)
#     
#   
# 
#     QCReport(Dilution,file="ExampleQC.pdf")   ##A QC report for the Example data will be generated
#   ## End(Not run)