houtAll

houtSel

houtSplit

A <code>data.frame</code>, resulting from a call to
<code><a rd-options="GOstats" href="/link/probeSetSummary?package=affycoretools&version=1.38.0&to=GOstats" data-mini-rdoc="GOstats::probeSetSummary">probeSetSummary</a></code>

An <code>link[Biobase:class.ExpressionSet]{ExpressionSet}</code>
object

eset

An <code><a rd-options="limma:marraylm" href="/link/MArrayLM?package=affycoretools&version=1.38.0&to=limma%3Amarraylm" data-mini-rdoc="limma:marraylm::MArrayLM">MArrayLM</a></code> object, resulting from
a call to <code><a rd-options="limma:ebayes" href="/link/eBayes?package=affycoretools&version=1.38.0&to=limma%3Aebayes" data-mini-rdoc="limma:ebayes::eBayes">eBayes</a></code>

Numeric vector of length one, designating which comparison to
select from the <code><a rd-options="limma:marraylm" href="/link/MArrayLM?package=affycoretools&version=1.38.0&to=limma%3Amarraylm" data-mini-rdoc="limma:marraylm::MArrayLM">MArrayLM</a></code> object

comp

Any or all of 'tstat', 'pval', 'FC', used to control the
output of statistics from the <code><a rd-options="limma:marraylm" href="/link/MArrayLM?package=affycoretools&version=1.38.0&to=limma%3Amarraylm" data-mini-rdoc="limma:marraylm::MArrayLM">MArrayLM</a></code> object

statistics

Boolean. Output HTML tables? Defaults to <code>TRUE</code>

html

Boolean. Output text tables? Defaults to <code>TRUE</code>

text


These functions are internal functions for <code>hyperGoutput</code> and are not
intended to be called directly by the end user.


internal

Various wrapper functions that have been written to
streamline the more common analyses that a core Biostatistician
might see.

James W MacDonald

affycoretools

Functions useful for those doing repetitive analyses
with Affymetrix GeneChips.

houtSel function

A <code>data.frame</code>, resulting from a call to
<code><a rd-options='GOstats' href='probeSetSummary'>probeSetSummary</a></code>

An <code><a rd-options='limma:marraylm' href='MArrayLM'>MArrayLM</a></code> object, resulting from
a call to <code><a rd-options='limma:ebayes' href='eBayes'>eBayes</a></code>

Numeric vector of length one, designating which comparison to
select from the <code><a rd-options='limma:marraylm' href='MArrayLM'>MArrayLM</a></code> object

Any or all of 'tstat', 'pval', 'FC', used to control the
output of statistics from the <code><a rd-options='limma:marraylm' href='MArrayLM'>MArrayLM</a></code> object

houtSel: Internal functions for hyperGoutput

Description

Usage

Arguments

Value

Details