pca.legend

A vector of numbers indicating group membership

groups

A vector of names describing the different groups

groupnames

A numeric data.frame delineating the plotting symbols (column
1) and colors (column 2) to use

pch.df

X-coordinate for legend. Used if automatic placement will
fail

x.coord

Y-coordinate for legend. Used if automatic placement will
fail

y.coord

Boolean: Save a small value for plotting additional text?

saveup


This function places a legend in a PCA plot depending on which corner is
available. If there are no available corners, user intervention will be
required. This is an internal function and not intended to be called by the
end user.


internal

Various wrapper functions that have been written to
streamline the more common analyses that a core Biostatistician
might see.

James W MacDonald

affycoretools

Functions useful for those doing repetitive analyses
with Affymetrix GeneChips

pca.legend function

This function places a legend in a PCA plot depending on which corner is
available. If there are no available corners, user intervention will be
required. This is an internal function and not intended to be called by the
end user.

pca.legend: A Function to Automagically Place a Legend in a PCA Plot

Description

Usage

Arguments

Value