writeFit

A <code>lmFit</code> object, created by the limma package.

An annotation package, specific for the chip used in the
analysis.

annotation

An <code>ExpressionSet</code> object containing expression values.

eset

Character vector of BiMaps from annotation package. As an
example, if the annotation package is the hgu133plus2.db package, then
'symbol' refers to the hgu133plus2SYMBOL BiMap.

touse


This function is designed to take an <code>ExpressionSet</code> an annotation
package and an <code>lmFit</code> object, and output an annotated text file
containing t-statistics, p-values, and fold change data for all contrasts.


manip

Various wrapper functions that have been written to
streamline the more common analyses that a core Biostatistician
might see.

James W MacDonald

affycoretools

Functions useful for those doing repetitive analyses
with Affymetrix GeneChips

writeFit function

This function is designed to take an <code>ExpressionSet</code> an annotation
package and an <code>lmFit</code> object, and output an annotated text file
containing t-statistics, p-values, and fold change data for all contrasts.

writeFit: Function to output annotated fit data from limma

Description

Usage

Arguments

Value

Details

See Also