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affypdnn (version 1.46.0)

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Description

The package contains functions to perform the PDNN method described by Li Zhang et al.

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Version

Version

1.46.0

License

LGPL

Maintainer

Laurent Gautier

Last Published

February 15th, 2017

Functions in affypdnn (1.46.0)

expressopdnn

Position Dependant Nearest Neighbors model for affy
matplotProbesPDNN

Plot the PDNN computed probe intensities
params.dilution

Parameters for the Dilution dataset
pdnn.params.chiptype

A function to fit PDNN parameters
transform.ProbeSet

A function to transform a ProbeSet
find.params.pdnn

A function to find the experiment specific PDNN parameters
hgu133a.pdnn.params

Chip-type specific data
generateExprVal.method.pdnn

Compute PM correction and summary expression value